TIP: The above guide typically compiles IQ-TREE with gcc. It can be copied to your system search path so that IQ-TREE can be called from the Terminal simply with the command line iqtree2. This creates an executable iqtree2 ( iqtree for version 1). Without this option, make uses only one core, which might be slow. J option tells it to use all CPU cores to speed up the compilation.
If this still failed, you have to manually specify the downloaded directory of Eigen3 with: cmake -DEIGEN3_INCLUDE_DIR=.
#INSTALL MPI ON WINDOWS FROM COMMAND LINE INSTALL#
If cmake failed with message about Eigen3 not found, then install Eigen3 library and run cmake again.
#INSTALL MPI ON WINDOWS FROM COMMAND LINE CODE#
TIP: Ready made IQ-TREE packages are provided for Debian and Arch Linux (AUR).Ĭhange to the source code folder: cd PATH_TO_EXTRACTED_SOURCE_CODEĬreate a subfolder, say, build and go into this subfolder: mkdir buildĬonfigure source code with CMake: cmake. ( Optional) Install git if you want to clone source code from IQ-TREE GitHub repository. Under MacOS you use Homebrew and run brew install libomp to install the OpenMP library. This should typically be the case with gcc under Linux. OpenMP library, which is used to compile the multicore version. If this failed, you have to manually specify -DEIGEN3_INCLUDE_DIR= to the cmake command (see below). By default IQ-TREE will detect the path to the installed Eigen3 library. Under MacOS you use Homebrew and run brew install eigen to install the Boost library.
Boost library is typically available under Linux. A C++ compiler such as GCC (version >= 4.8), Clang, MS Visual Studio and Intel C++ compiler.
0 kommentar(er)
